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Control PyMOL with natural language for protein structure analysis and visualization.
Copy the install command and let the AI configure it · recommended for beginners
No copy-paste install info for "MCPymol" yet — see the docs or source repo.
Load PDB ID 1CRN in PyMOL, show it in cartoon view, and highlight ligands and water molecules in different colors.
The tool loads the structure and creates a clearly colored 3D visualization.
Measure the distance between the key side-chain atoms of Ser45 and His57 in chain A, and annotate the result in PyMOL.
It returns the distance measurement and shows labeled measurement lines in the structure view.
Create an analysis view around the active site: show residues within 5 Å, highlight hydrogen bonds, and hide irrelevant regions.
The tool produces an active-site-focused view for examining nearby residues and interactions.
Visualize molecular systems and analyze MD trajectories and hydrate cages headlessly.
Control ChimeraX in natural language for protein structure visualization and analysis.
Connect to and operate MCP servers from the command line.
Control ChimeraX for molecular visualization, analysis, screenshots, and session management.
Connect to Jupyter via MCP to run code and explore data interactively.
Manage Proxmox VMs, containers, nodes, and resources using natural language.