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Lets coding agents query, explore, analyze, and export Reactome pathway data.
Copy the install command and let the AI configure it · recommended for beginners
No copy-paste install info for "reactome-mcp" yet — see the docs or source repo.
Search the Reactome database for pathways related to apoptosis and return the basic details and identifiers of the most relevant results.
A list of relevant pathways with names, IDs, and brief descriptions.
Using a given Reactome pathway ID, traverse the hierarchy upward or downward and summarize parent-child pathway relationships.
The pathway’s position in the hierarchy, including related parent and child nodes.
Run gene-set enrichment analysis in Reactome for this gene list and list significantly related pathways.
A summary of enriched pathways and their significance results.
Researchers analyzing genes or pathways can use this tool to search Reactome entries, inspect details, and understand hierarchy relationships. It helps provide structured references for downstream biological interpretation.
Developers can let coding agents directly access the Reactome database for search, lookup, and export tasks. This makes it easier to integrate pathway data into automated analysis or development workflows.
When interoperability with other bioinformatics tools is needed, users can export results in SBML or SBGN formats. This supports sharing pathway models or diagram data across systems.
It is an MCP tool that lets coding agents interact with the Reactome pathway database. Known capabilities include search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.
Based on the provided description, it supports pathway search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis. For exact parameters and output formats, see the source repository.
The provided material does not specify installation steps, runtime dependencies, or whether any keys are required. See the source repository for details.
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