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Access, search, and analyze cancer genomics data from the NCI GDC.
Copy the install command and let the AI configure it · recommended for beginners
Please install the "Gdc" MCP server from askskill: Run: claude mcp add --transport http 'io-github-pipeworx-io-gdc' 'https://gateway.pipeworx.io/gdc/mcp'
Please search the GDC for an overview of the TCGA-BRCA project, including case counts, sample types, and available data categories.
Returns a project summary with case volume, sample distribution, and main data types.
Find cases with EGFR mutations in lung adenocarcinoma projects within the GDC, and summarize the related sample and clinical information fields.
Outputs a filtered case list along with an overview of available sample and clinical fields.
Using colorectal cancer-related projects in the GDC, prepare a list of RNA-seq data files suitable for expression analysis, including file IDs, project names, and data formats.
Generates a structured file inventory for downstream download and expression analysis workflows.
Access cBioPortal to explore cancer genomics alterations and cohort data.
Query gene-disease validity data and detect consensus or conflicts across assertions.
Search and retrieve PubMed, protein, and nucleotide data from NCBI databases.
Search and download NCBI GEO gene expression data using natural language.
Query clinical records and sales data through two live MCP demo servers.
Query, filter, and analyze CDC open data through the Socrata API.