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Control ChimeraX in natural language for protein structure visualization and analysis.
Copy the install command and let the AI configure it · recommended for beginners
No copy-paste install info for "ChimeraX MCP Server" yet — see the docs or source repo.
In ChimeraX, load the protein structure with PDB ID 1CRN, show it in cartoon view, color alpha helices red, and beta sheets yellow.
Returns the executed steps or command results and displays the protein colored by secondary structure in ChimeraX.
Open my current protein structure file, select residues within 5 Å of the ligand, label those residues, and show the ligand as sticks.
Outputs the selection and labeling results, and highlights residues near the active site and the ligand in the viewer.
Load two protein structure files, align them structurally, calculate the RMSD, and color the regions of difference distinctly.
Returns alignment and RMSD analysis results, and produces a visualization highlighting structural differences.
Control ChimeraX for molecular visualization, analysis, screenshots, and session management.
Control PyMOL with natural language for protein structure analysis and visualization.
Turn CLI tools or REST APIs into MCP servers for Claude.
Analyze, process, and plot X-ray absorption spectra using natural language.
Search ChEMBL bioactivity data and compound properties from Claude or ChatGPT.
Load models and run interpretability analyses, probes, steering, and ablations.